MLOC_45268 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains3.098954.185664.617414.11719
LEAShoots from the seedlings (10 cm shoot stage)1.599825.113313.691952.9883
INF1Young developing inflorescences (5mm)13.121215.173817.61712.2193
INF2Developing inflorescences (1-1.5 cm)24.32421.819717.25122.7742
ROORoots from the seedlings (10 cm shoot stage)2.717811.810892.069692.4159
NODDeveloping tillers at six leaf stage, 3rd internode0.9296440.7718271.63633.16124
CAR5Developing grain, bracts removed (5 DPA)6.031645.665266.290095.38744
CAR15Developing grain, bracts removed (15 DPA)3.574964.694814.620549.28696



CDS Structure of MLOC_45268






Members of Gene Cluster

This cluster has a confidence assignment of non-High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_45268.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_45268.1CUST_6351_PI427708083AvailableAvailablecontig_277013 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os02g58090.1 -1 3e-62 204 101/126 (80%) 13102.m06725 protein PSP domain containing protein, expressed
TAIR PP10 AT4G21660.1 -1 7e-59 194 97/126 (77%) proline-rich spliceosome-associated (PSP) family protein | chr4:11506259-11509772 REVERSE LENGTH=584