MLOC_4523 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains2.986976.18775.800484.92409
LEAShoots from the seedlings (10 cm shoot stage)2.6670.7916140.5635481.19852
INF1Young developing inflorescences (5mm)23.651924.245922.208918.0472
INF2Developing inflorescences (1-1.5 cm)20.081624.085920.858921.989
ROORoots from the seedlings (10 cm shoot stage)0.8685982.584421.901332.67641
NODDeveloping tillers at six leaf stage, 3rd internode0.06404930.1193960.09036630.394156
CAR5Developing grain, bracts removed (5 DPA)6.894436.550947.008255.97702
CAR15Developing grain, bracts removed (15 DPA)1.210440.9271291.258492.2805



CDS Structure of MLOC_4523






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_4523.2
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_4523.2CUST_12304_PI427708080AvailableAvailablecontig_135217 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os04g35420.1 -2 0.0 1462 782/1114 (70%) 13104.m03451 protein helicase conserved C-terminal domain containing protein, expressed
TAIR PP10 AT1G10930.1 -2 0.0 996 591/1136 (52%) | Symbols: ATSGS1, RECQ4A, ATRECQ4A | DNA helicase (RECQl4A) | chr1:3648032-3654997 REVERSE LENGTH=1188