MLOC_45201 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains1.768192.631722.262841.63349
LEAShoots from the seedlings (10 cm shoot stage)1.75012.024671.698041.13239
INF1Young developing inflorescences (5mm)5.731996.055496.381563.52715
INF2Developing inflorescences (1-1.5 cm)9.029517.083785.775616.28168
ROORoots from the seedlings (10 cm shoot stage)1.078482.005331.868371.44919
NODDeveloping tillers at six leaf stage, 3rd internode0.5665891.028581.536862.60138
CAR5Developing grain, bracts removed (5 DPA)3.54383.287683.843632.43264
CAR15Developing grain, bracts removed (15 DPA)0.9402210.9587441.109051.49604



CDS Structure of MLOC_45201






Members of Gene Cluster

This cluster has a confidence assignment of non-High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_45201.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_45201.1NoneAvailableAvailablecontig_276725 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os07g29360.1 +3 7e-37 151 72/76 (95%) 13107.m02945 protein tetratricopeptide repeat domain containing protein, expressed
TAIR PP10 AT2G06210.1 +3 5e-29 125 57/76 (75%) | Symbols: ELF8, VIP6 | binding | chr2:2429108-2436588 REVERSE LENGTH=1091