MLOC_45193 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains0.3500541.194871.428341.08372
LEAShoots from the seedlings (10 cm shoot stage)66.68287.827273.24660.0493
INF1Young developing inflorescences (5mm)1.506290.8432340.4988920.851551
INF2Developing inflorescences (1-1.5 cm)1.237991.250271.6181.60579
ROORoots from the seedlings (10 cm shoot stage)00.4084111.706210.961509
NODDeveloping tillers at six leaf stage, 3rd internode143.92857.4728100.297165.038
CAR5Developing grain, bracts removed (5 DPA)22.979725.657624.965926.4085
CAR15Developing grain, bracts removed (15 DPA)1.858062.500641.580675.2805



CDS Structure of MLOC_45193






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_45193.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
AK370802NoneNoneNoneNone
MLOC_45193.1CUST_2719_PI427708080AvailableAvailablecontig_276690 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os02g49870.2 +2 3e-61 194 108/126 (86%) 13102.m05663 protein expressed protein
TAIR PP10 AT4G01150.1 +2 4e-47 157 73/91 (80%) unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: thylakoid, chloroplast thylakoid membrane, chloroplast, plastoglobule, chloroplast envelope; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G38100.1); Has 323 Blast hits to 323 proteins in 59 species: Archae - 0; Bacteria - 107; Metazoa - 0; Fungi - 0; Plants - 206; Viruses - 0; Other Eukaryotes - 10 (source: NCBI BLink). | chr4:493692-494668 FORWARD LENGTH=164