MLOC_45190 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains8.5953216.64158.4122112.7241
LEAShoots from the seedlings (10 cm shoot stage)11.760911.89099.44189.59373
INF1Young developing inflorescences (5mm)36.234928.102133.534226.3954
INF2Developing inflorescences (1-1.5 cm)26.430521.056420.830425.4605
ROORoots from the seedlings (10 cm shoot stage)4.8938211.17632.1077811.2322
NODDeveloping tillers at six leaf stage, 3rd internode4.899467.8152910.029427.4157
CAR5Developing grain, bracts removed (5 DPA)14.514612.98628.9300911.713
CAR15Developing grain, bracts removed (15 DPA)5.059765.562183.8126811.4453



CDS Structure of MLOC_45190






Members of Gene Cluster

This cluster has a confidence assignment of non-High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_45190.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_45190.1CUST_6341_PI427708083AvailableAvailablecontig_27668 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os06g07080.1 +2 3e-47 164 81/86 (94%) 13106.m00735 protein pre-mRNA-processing-splicing factor 8, putative, expressed
TAIR PP10 AT1G80070.1 +2 3e-47 164 81/86 (94%) | Symbols: SUS2, EMB33, EMB177, EMB14 | Pre-mRNA-processing-splicing factor | chr1:30118052-30127574 FORWARD LENGTH=2359