MLOC_4517 FPKM values
| FPKM by Treatment | FPKM by Replicate |
|---|
| 
|
| Treatment ID | Treatment Description | Rep 1 FPKM | Rep 2 FPKM | Rep 3 FPKM | Treatment FPKM |
|---|
| EMB | 4-day embryos dissected from germinating grains | 6.65993 | 6.20863 | 5.66927 | 6.6308 |
| LEA | Shoots from the seedlings (10 cm shoot stage) | 0.776684 | 0.83979 | 1.52577 | 0.880288 |
| INF1 | Young developing inflorescences (5mm) | 0.41447 | 0.582674 | 0.449677 | 0.482043 |
| INF2 | Developing inflorescences (1-1.5 cm) | 0.532069 | 0.848575 | 0.715008 | 0.894698 |
| ROO | Roots from the seedlings (10 cm shoot stage) | 7.50346 | 8.94759 | 7.1891 | 10.0622 |
| NOD | Developing tillers at six leaf stage, 3rd internode | 0.620577 | 0.621697 | 0.12761 | 1.22688 |
| CAR5 | Developing grain, bracts removed (5 DPA) | 4.40213 | 4.7448 | 4.2447 | 4.94635 |
| CAR15 | Developing grain, bracts removed (15 DPA) | 1.26234 | 1.34394 | 1.27547 | 3.62985 |
CDS Structure of MLOC_4517
Members of Gene Cluster
This cluster has a confidence assignment of
High Confidence.
The gene has a transcript that is part of a cluster represented by
MLOC_4517.1
Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)
| Database | Hit | Frame | E-value | Score | % Identity | Description |
|---|
| Rice PP6 |
LOC_Os10g32810.1 |
+3 |
0.0 |
634 |
334/442 (76%) |
13110.m02875 protein beta-amylase, putative, expressed |
| TAIR PP10 |
AT3G23920.1 |
+3 |
0.0 |
557 |
291/439 (66%) |
| Symbols: BAM1, BMY7, TR-BAMY | beta-amylase 1 | chr3:8641722-8644199 FORWARD LENGTH=575 |
