MLOC_4516 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains0000
LEAShoots from the seedlings (10 cm shoot stage)2.054418.5245210.42345.18861
INF1Young developing inflorescences (5mm)00.05868820.06295250.108292
INF2Developing inflorescences (1-1.5 cm)0.0503214000.0630882
ROORoots from the seedlings (10 cm shoot stage)0000
NODDeveloping tillers at six leaf stage, 3rd internode0.08481930.03544050.2213870.196159
CAR5Developing grain, bracts removed (5 DPA)0.1207270.3417490.174710.237394
CAR15Developing grain, bracts removed (15 DPA)0000



CDS Structure of MLOC_4516






Members of Gene Cluster

This cluster has a confidence assignment of non-High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_4516.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
AK357874NoneNoneNoneNone
AK376856NoneNoneNoneNone
MLOC_4516.1CUST_34_PI427708083AvailableAvailablecontig_135210 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os03g11250.1 -1 4e-17 77 44/76 (58%) 13103.m01268 protein expressed protein
TAIR PP10 AT4G30845.1 -1 1e-12 64 35/76 (46%) unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; Has 16 Blast hits to 16 proteins in 8 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 16; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr4:15019895-15020319 FORWARD LENGTH=114