MLOC_45140 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains26.061920.009619.86425.5641
LEAShoots from the seedlings (10 cm shoot stage)10.21531.34291.778873.899
INF1Young developing inflorescences (5mm)57.741459.034448.360755.692
INF2Developing inflorescences (1-1.5 cm)40.853457.055443.671765.1601
ROORoots from the seedlings (10 cm shoot stage)9.1179413.903515.863320.6058
NODDeveloping tillers at six leaf stage, 3rd internode0.05599460.1144750.07306450.421809
CAR5Developing grain, bracts removed (5 DPA)30.759131.44135.804839.9372
CAR15Developing grain, bracts removed (15 DPA)0.9481370.5574571.305732.42482



CDS Structure of MLOC_45140






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_45140.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
AK357684NoneNoneNoneNone
MLOC_45140.1CUST_2717_PI427708080AvailableAvailablecontig_276463 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os10g35580.1 +3 7e-173 494 274/347 (79%) 13110.m03200 protein ATEB1A-like microtubule associated protein, putative, expressed
TAIR PP10 AT5G67270.1 +3 4e-110 333 196/356 (55%) | Symbols: ATEB1C, EB1C, ATEB1H1 | end binding protein 1C | chr5:26840248-26841984 REVERSE LENGTH=329