MLOC_45112 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains45.750140.039950.334746.349
LEAShoots from the seedlings (10 cm shoot stage)46.467425.247324.423629.0608
INF1Young developing inflorescences (5mm)11.962312.105313.264910.6061
INF2Developing inflorescences (1-1.5 cm)9.2097210.460312.442311.6756
ROORoots from the seedlings (10 cm shoot stage)41.204143.609552.248657.8133
NODDeveloping tillers at six leaf stage, 3rd internode269.709184.853100.865617.15
CAR5Developing grain, bracts removed (5 DPA)15.947119.522519.817318.7047
CAR15Developing grain, bracts removed (15 DPA)3.675334.197434.599579.44568



CDS Structure of MLOC_45112






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_45112.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
AK252661.1NoneNoneNoneNone
MLOC_45112.1CUST_2714_PI427708080AvailableAvailablecontig_276361 (Not mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os05g20050.1 +3 4e-129 376 202/216 (94%) 13105.m02121 protein ras-related protein, putative, expressed
TAIR PP10 AT3G46830.1 +3 6e-104 311 167/217 (77%) | Symbols: ATRAB11A, ATRABA2C, ATRAB-A2C, RAB-A2C, RABA2c | RAB GTPase homolog A2C | chr3:17246699-17248362 REVERSE LENGTH=217