MLOC_4488 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains36.160920.994221.862224.5082
LEAShoots from the seedlings (10 cm shoot stage)17.59359.058614.968711.5305
INF1Young developing inflorescences (5mm)26.837134.093137.242525.6346
INF2Developing inflorescences (1-1.5 cm)26.726925.345324.773426.238
ROORoots from the seedlings (10 cm shoot stage)35.427920.145618.44325.8478
NODDeveloping tillers at six leaf stage, 3rd internode5.9131913.746121.600142.321
CAR5Developing grain, bracts removed (5 DPA)15.565616.078815.774514.626
CAR15Developing grain, bracts removed (15 DPA)9.195711.01558.6299521.2191



CDS Structure of MLOC_4488






Members of Gene Cluster

This cluster has a confidence assignment of non-High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_4488.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_4488.1CUST_6290_PI427708083AvailableAvailablecontig_135182 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os03g08060.1 -3 3e-44 108 53/60 (88%) 13103.m30165 protein elongation factor Tu, putative, expressed
TAIR PP10 AT5G60390.3 -3 1e-42 105 50/60 (83%) GTP binding Elongation factor Tu family protein | chr5:24289226-24290675 FORWARD LENGTH=449