MLOC_44876 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains15.864914.036214.935213.9607
LEAShoots from the seedlings (10 cm shoot stage)17.924110.983316.911912.7707
INF1Young developing inflorescences (5mm)28.660929.556828.269621.7502
INF2Developing inflorescences (1-1.5 cm)25.132327.427224.480826.4939
ROORoots from the seedlings (10 cm shoot stage)15.489615.222913.944217.6693
NODDeveloping tillers at six leaf stage, 3rd internode7.9168810.160715.098835.6456
CAR5Developing grain, bracts removed (5 DPA)14.706914.048616.426113.426
CAR15Developing grain, bracts removed (15 DPA)7.404326.469586.8768414.4924



CDS Structure of MLOC_44876






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_44876.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_44876.1CUST_12271_PI427708080AvailableAvailablecontig_275606 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os03g46480.2 +3 2e-128 382 249/355 (70%) 13103.m05005 protein ranBP1 domain containing protein, expressed
TAIR PP10 AT4G11790.1 +3 8e-61 208 150/378 (40%) Pleckstrin homology (PH) domain superfamily protein | chr4:7090456-7093208 FORWARD LENGTH=443