MLOC_44853 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains5.2340711.957812.117.72326
LEAShoots from the seedlings (10 cm shoot stage)24.216313.35099.4968711.4563
INF1Young developing inflorescences (5mm)18.664116.201319.600712.2434
INF2Developing inflorescences (1-1.5 cm)16.376819.526518.634416.3922
ROORoots from the seedlings (10 cm shoot stage)1.832344.183123.631673.28451
NODDeveloping tillers at six leaf stage, 3rd internode12.05745.399886.5047814.0044
CAR5Developing grain, bracts removed (5 DPA)11.6112.129212.72789.48697
CAR15Developing grain, bracts removed (15 DPA)2.386441.503873.872374.39973



CDS Structure of MLOC_44853






Members of Gene Cluster

This cluster has a confidence assignment of non-High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_44853.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_44853.1CUST_12473_PI427708083AvailableAvailablecontig_275542 (Not mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os05g04170.3 +3 5e-22 100 44/54 (81%) 13105.m00413 protein AMP-binding enzyme, putative, expressed
TAIR PP10 AT4G23850.1 +3 3e-11 66 32/54 (59%) | Symbols: LACS4 | AMP-dependent synthetase and ligase family protein | chr4:12403720-12408263 REVERSE LENGTH=666