MLOC_4480 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains20.899217.065415.71417.2894
LEAShoots from the seedlings (10 cm shoot stage)22.483529.117232.153522.9109
INF1Young developing inflorescences (5mm)15.731718.251216.151414.3518
INF2Developing inflorescences (1-1.5 cm)18.578619.481217.129120.4609
ROORoots from the seedlings (10 cm shoot stage)20.331820.801819.342823.6205
NODDeveloping tillers at six leaf stage, 3rd internode21.081629.471836.725392.8697
CAR5Developing grain, bracts removed (5 DPA)13.656513.65513.96313.3678
CAR15Developing grain, bracts removed (15 DPA)2.950983.330793.10337.55806



CDS Structure of MLOC_4480






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_4480.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_4480.1CUST_12265_PI427708080AvailableAvailablecontig_135174 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os07g02710.1 -1 5e-75 237 141/161 (88%) 13107.m00197 protein expressed protein
TAIR PP10 AT4G33625.2 -1 6e-56 186 104/152 (68%) FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: cultured cell; CONTAINS InterPro DOMAIN/s: Golgi apparatus membrane protein TVP15 (InterPro:IPR013714); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). | chr4:16153114-16154543 REVERSE LENGTH=199