MLOC_44788 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains13.909216.701317.521414.1878
LEAShoots from the seedlings (10 cm shoot stage)18.850715.18918.46113.844
INF1Young developing inflorescences (5mm)29.965226.598826.95821.0373
INF2Developing inflorescences (1-1.5 cm)34.588729.409634.759930.8915
ROORoots from the seedlings (10 cm shoot stage)18.890421.529221.649922.4351
NODDeveloping tillers at six leaf stage, 3rd internode9.4507712.015216.714137.1661
CAR5Developing grain, bracts removed (5 DPA)23.008424.368721.765319.2196
CAR15Developing grain, bracts removed (15 DPA)15.903616.19915.784932.2676



CDS Structure of MLOC_44788






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_44788.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_44788.1CUST_17685_PI427708080AvailableAvailablecontig_275385 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os11g03890.1 +1 7e-149 444 248/290 (86%) 13111.m00332 protein RNA recognition motif containing protein, putative, expressed
TAIR PP10 AT5G66010.1 +1 3e-77 254 149/291 (51%) RNA-binding (RRM/RBD/RNP motifs) family protein | chr5:26399612-26400753 FORWARD LENGTH=255