MLOC_44772 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains5.263094.434544.397185.19625
LEAShoots from the seedlings (10 cm shoot stage)8.709256.551997.234036.76186
INF1Young developing inflorescences (5mm)9.246446.12787.249547.17489
INF2Developing inflorescences (1-1.5 cm)5.273446.912827.745478.33759
ROORoots from the seedlings (10 cm shoot stage)0.6708792.390422.762293.07864
NODDeveloping tillers at six leaf stage, 3rd internode9.353495.231343.6131315.8005
CAR5Developing grain, bracts removed (5 DPA)31.998535.670833.035938.6696
CAR15Developing grain, bracts removed (15 DPA)0.9717410.7349381.094732.47308



CDS Structure of MLOC_44772






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_44772.2
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_44772.2CUST_12262_PI427708080AvailableAvailablecontig_275339 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os04g44950.1 -2 7e-134 392 208/307 (68%) 13104.m04498 protein short-chain dehydrogenase/reductase, putative, expressed
TAIR PP10 AT1G01800.1 -2 1e-73 236 134/296 (45%) NAD(P)-binding Rossmann-fold superfamily protein | chr1:293396-294888 FORWARD LENGTH=295