MLOC_4477 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains4.665772.848025.263653.48939
LEAShoots from the seedlings (10 cm shoot stage)1.623380.7098091.759231.12011
INF1Young developing inflorescences (5mm)1.910152.940684.922.17569
INF2Developing inflorescences (1-1.5 cm)3.187012.462633.509822.92343
ROORoots from the seedlings (10 cm shoot stage)3.840562.788291.763193.17547
NODDeveloping tillers at six leaf stage, 3rd internode12.7958.826794.6151924.0314
CAR5Developing grain, bracts removed (5 DPA)3.784094.975185.77864.03919
CAR15Developing grain, bracts removed (15 DPA)1.817172.2812.858554.38442



CDS Structure of MLOC_4477






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_4477.2
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_4477.2CUST_12261_PI427708080AvailableAvailablecontig_135171 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os01g59520.3 -1 1e-25 101 61/68 (90%) 13101.m06327 protein cupin, RmlC-type, putative, expressed
TAIR PP10 AT3G56820.1 -1 9e-11 59 41/69 (59%) unknown protein; Has 34 Blast hits to 34 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 27; Viruses - 0; Other Eukaryotes - 7 (source: NCBI BLink). | chr3:21040061-21041711 REVERSE LENGTH=220