MLOC_44755 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains3.7797811.95959.4492611.968
LEAShoots from the seedlings (10 cm shoot stage)762.1931503.521473.031187.39
INF1Young developing inflorescences (5mm)27.162627.30331.722630.7811
INF2Developing inflorescences (1-1.5 cm)19.227621.680233.371532.8541
ROORoots from the seedlings (10 cm shoot stage)1.949825.8110819.16859.34111
NODDeveloping tillers at six leaf stage, 3rd internode643.635837.0811138.492863.74
CAR5Developing grain, bracts removed (5 DPA)155.505166.014157.159196.472
CAR15Developing grain, bracts removed (15 DPA)28.731938.731733.4309101.528



CDS Structure of MLOC_44755






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_44755.2
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
AK248207.1NoneNoneNoneNone
MLOC_44755.2CUST_2684_PI427708080AvailableAvailablecontig_275313 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os08g33820.1 +3 2e-137 395 189/222 (85%) 13108.m03529 protein chlorophyll A-B binding protein, putative, expressed
TAIR PP10 AT3G47470.1 +3 2e-125 365 176/227 (78%) | Symbols: LHCA4, CAB4 | light-harvesting chlorophyll-protein complex I subunit A4 | chr3:17493622-17494773 REVERSE LENGTH=251