MLOC_44688 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains0.5760452.630232.533171.93083
LEAShoots from the seedlings (10 cm shoot stage)0.9757460.1782290.2018680.383432
INF1Young developing inflorescences (5mm)0.1684010.1165530.1615940.119796
INF2Developing inflorescences (1-1.5 cm)0.2425480.172230.07888810.185255
ROORoots from the seedlings (10 cm shoot stage)0.8911412.121211.319331.98289
NODDeveloping tillers at six leaf stage, 3rd internode2.144550.9501720.5013972.48849
CAR5Developing grain, bracts removed (5 DPA)2.939213.0973.755972.89519
CAR15Developing grain, bracts removed (15 DPA)0.4172270.2325710.546170.848965



CDS Structure of MLOC_44688






Members of Gene Cluster

This cluster has a confidence assignment of non-High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_44688.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_44688.1CUST_12464_PI427708083AvailableAvailablecontig_275180 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os01g52550.1 +3 2e-67 244 127/152 (84%) 13101.m05501 protein ABC transporter, ATP-binding protein, putative, expressed
TAIR PP10 AT3G28345.1 +3 8e-31 130 66/146 (45%) ABC transporter family protein | chr3:10593921-10598775 REVERSE LENGTH=1240