MLOC_44676 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains1139.91780.081865.903970.311
LEAShoots from the seedlings (10 cm shoot stage)224.743121.359101.512130.252
INF1Young developing inflorescences (5mm)143.054153.339156.476143.003
INF2Developing inflorescences (1-1.5 cm)141.547129.165160.735171.819
ROORoots from the seedlings (10 cm shoot stage)1551.9913.477854.011268.95
NODDeveloping tillers at six leaf stage, 3rd internode365.877332.736401.1171116.8
CAR5Developing grain, bracts removed (5 DPA)110.884121.696122.751132.801
CAR15Developing grain, bracts removed (15 DPA)65.487449.750462.2144152.977



CDS Structure of MLOC_44676






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_44676.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
AK249282.1NoneNoneNoneNone
MLOC_44676.1CUST_2678_PI427708080AvailableAvailablecontig_275145 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os01g55830.1 +1 8e-120 350 163/213 (77%) 13101.m05891 protein glutathione S-transferase, putative, expressed
TAIR PP10 AT3G62760.1 +1 8e-54 180 91/207 (44%) | Symbols: ATGSTF13 | Glutathione S-transferase family protein | chr3:23217425-23218246 REVERSE LENGTH=219