MLOC_44630 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains80.657458.569454.195660.996
LEAShoots from the seedlings (10 cm shoot stage)29.537710.10635.9023411.9263
INF1Young developing inflorescences (5mm)114.7121.94161.573117.474
INF2Developing inflorescences (1-1.5 cm)58.894851.2865.840764.5773
ROORoots from the seedlings (10 cm shoot stage)56.048652.08743.333453.088
NODDeveloping tillers at six leaf stage, 3rd internode22.631125.659810.040355.0395
CAR5Developing grain, bracts removed (5 DPA)22.959419.186118.350919.8399
CAR15Developing grain, bracts removed (15 DPA)1.799231.341181.678733.96062



CDS Structure of MLOC_44630






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_44630.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
AK367569NoneNoneNoneNone
MLOC_44630.1CUST_2675_PI427708080AvailableAvailablecontig_275062 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os07g38130.1 +1 3e-171 498 256/307 (83%) 13107.m03937 protein polygalacturonase inhibitor 1 precursor, putative, expressed
TAIR PP10 AT5G06870.1 +1 4e-63 216 130/307 (42%) | Symbols: PGIP2, ATPGIP2 | polygalacturonase inhibiting protein 2 | chr5:2133941-2135016 FORWARD LENGTH=330