MLOC_44626 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains9.258054.854344.438544.90389
LEAShoots from the seedlings (10 cm shoot stage)4.571053.675155.377543.08541
INF1Young developing inflorescences (5mm)3.379012.593443.067241.9884
INF2Developing inflorescences (1-1.5 cm)2.531432.736812.291262.2713
ROORoots from the seedlings (10 cm shoot stage)8.836295.658633.120015.67277
NODDeveloping tillers at six leaf stage, 3rd internode4.782954.739364.9331612.0053
CAR5Developing grain, bracts removed (5 DPA)2.031381.262362.116371.32516
CAR15Developing grain, bracts removed (15 DPA)0.4141020.1416981.01730.801151



CDS Structure of MLOC_44626






Members of Gene Cluster

This cluster has a confidence assignment of non-High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_44626.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_44626.1CUST_6252_PI427708083AvailableAvailablecontig_275053 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os01g46932.1 +3 4e-16 75 37/39 (95%) 13101.m04829 protein vacuolar protein-sorting-associated protein 25, putative, expressed
TAIR PP10 AT4G19003.1 +3 2e-13 66 32/40 (80%) | Symbols: VPS25 | E2F/DP family winged-helix DNA-binding domain | chr4:10407571-10408582 REVERSE LENGTH=179