MLOC_44617 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains89.253389.155785.0034100.991
LEAShoots from the seedlings (10 cm shoot stage)47.336524.53423.937731.9131
INF1Young developing inflorescences (5mm)334.018314.206310.066301.134
INF2Developing inflorescences (1-1.5 cm)190.769186.91189.956235.198
ROORoots from the seedlings (10 cm shoot stage)30.055287.319477.9493124.047
NODDeveloping tillers at six leaf stage, 3rd internode0.7112460.8848723.623395.82182
CAR5Developing grain, bracts removed (5 DPA)98.508690.460899.9087109.551
CAR15Developing grain, bracts removed (15 DPA)20.450418.324217.665947.5326



CDS Structure of MLOC_44617






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_44617.2
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
AK252210.1NoneNoneNoneNone
MLOC_44617.2CUST_2673_PI427708080AvailableAvailablecontig_275042 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os03g22740.1 +2 0.0 796 424/469 (90%) 13103.m02743 protein nucleolar protein NOP5-1, putative
TAIR PP10 AT3G05060.1 +2 0.0 689 363/473 (77%) NOP56-like pre RNA processing ribonucleoprotein | chr3:1413174-1415564 REVERSE LENGTH=533