MLOC_44536 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains8.279464.792636.539156.59063
LEAShoots from the seedlings (10 cm shoot stage)76.852810.18063.921525.956
INF1Young developing inflorescences (5mm)0.3674110.08284930.04779510.155711
INF2Developing inflorescences (1-1.5 cm)2.948222.734932.388633.48634
ROORoots from the seedlings (10 cm shoot stage)264.709155.075104.26221.781
NODDeveloping tillers at six leaf stage, 3rd internode0.03260540.07752840.0984970.292207
CAR5Developing grain, bracts removed (5 DPA)5.1733311.904513.915113.1649
CAR15Developing grain, bracts removed (15 DPA)415.05462.337382.5041156.61



CDS Structure of MLOC_44536






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_44536.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
AK252757.1NoneNoneNoneNone
MLOC_44536.1CUST_18042_PI427708080AvailableAvailablecontig_274906 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os01g04370.1 -1 7e-60 192 128/152 (84%) 13101.m00396 protein hsp20/alpha crystallin family protein, putative, expressed
TAIR PP10 AT5G59720.1 -1 4e-49 164 110/150 (73%) | Symbols: HSP18.2 | heat shock protein 18.2 | chr5:24062632-24063117 FORWARD LENGTH=161