MLOC_44532 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains19.316613.689413.25211.4259
LEAShoots from the seedlings (10 cm shoot stage)10.96645.191666.325245.1714
INF1Young developing inflorescences (5mm)10.121210.77528.703075.95431
INF2Developing inflorescences (1-1.5 cm)4.864325.349155.267854.11224
ROORoots from the seedlings (10 cm shoot stage)14.286712.263914.25310.4901
NODDeveloping tillers at six leaf stage, 3rd internode12.32478.139688.5879320.6646
CAR5Developing grain, bracts removed (5 DPA)8.004169.609027.765155.60671
CAR15Developing grain, bracts removed (15 DPA)1.393791.158321.528782.17654



CDS Structure of MLOC_44532






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_44532.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_44532.1CUST_12238_PI427708080AvailableAvailablecontig_274893 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os11g33100.1 -3 5e-62 211 123/163 (75%) 13111.m03235 protein SNARE associated Golgi protein, putative, expressed
TAIR PP10 AT1G44960.1 -3 5e-37 140 76/161 (47%) SNARE associated Golgi protein family | chr1:16999576-17001447 FORWARD LENGTH=261