MLOC_44488 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains5.684867.200847.093115.83388
LEAShoots from the seedlings (10 cm shoot stage)9.4092414.033215.6059.54865
INF1Young developing inflorescences (5mm)00.031326800.0234182
INF2Developing inflorescences (1-1.5 cm)0.1034050.0488480.1046230.0765664
ROORoots from the seedlings (10 cm shoot stage)6.105888.681039.027278.28049
NODDeveloping tillers at six leaf stage, 3rd internode0.3591730.3273260.4162380.967431
CAR5Developing grain, bracts removed (5 DPA)27.824930.647833.789624.7392
CAR15Developing grain, bracts removed (15 DPA)3.265081.943932.93655.32717



CDS Structure of MLOC_44488






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_44488.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
AK250974.1NoneNoneNoneNone
MLOC_44488.1CUST_2655_PI427708080AvailableAvailablecontig_274814 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os06g46310.2 +1 0.0 947 493/550 (90%) 13106.m04889 protein metal transporter Nramp6, putative, expressed
TAIR PP10 AT1G80830.1 +1 0.0 769 390/541 (72%) | Symbols: NRAMP1, PMIT1, ATNRAMP1 | natural resistance-associated macrophage protein 1 | chr1:30373066-30375644 REVERSE LENGTH=532