MLOC_44484 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains32.38416.668918.814216.8804
LEAShoots from the seedlings (10 cm shoot stage)16.638312.228120.920310.2584
INF1Young developing inflorescences (5mm)5.865268.613389.336735.87664
INF2Developing inflorescences (1-1.5 cm)6.683426.39326.692276.32388
ROORoots from the seedlings (10 cm shoot stage)53.445222.943420.325421.002
NODDeveloping tillers at six leaf stage, 3rd internode14.8523.80820.566543.2098
CAR5Developing grain, bracts removed (5 DPA)11.413515.108210.453710.195
CAR15Developing grain, bracts removed (15 DPA)2.974243.401992.90596.76801



CDS Structure of MLOC_44484






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_44484.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
AK370599NoneNoneNoneNone
MLOC_44484.1CUST_2653_PI427708080AvailableAvailablecontig_274800 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os01g10010.2 +1 5e-66 213 159/201 (79%) 13101.m14932 protein prenylated rab acceptor, putative, expressed
TAIR PP10 AT3G13720.1 +1 2e-26 105 64/122 (52%) | Symbols: PRA1.F3, PRA8 | PRA1 (Prenylated rab acceptor) family protein | chr3:4495202-4495768 REVERSE LENGTH=188