MLOC_44433 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains2.083162.912993.290852.77371
LEAShoots from the seedlings (10 cm shoot stage)2.847632.292971.611561.94742
INF1Young developing inflorescences (5mm)4.669864.984545.584654.10752
INF2Developing inflorescences (1-1.5 cm)5.898796.300736.2786.24845
ROORoots from the seedlings (10 cm shoot stage)1.640321.841682.083542.28729
NODDeveloping tillers at six leaf stage, 3rd internode1.914322.016032.318847.21517
CAR5Developing grain, bracts removed (5 DPA)3.049613.003782.650182.67765
CAR15Developing grain, bracts removed (15 DPA)0.767560.6965440.8735211.68442



CDS Structure of MLOC_44433






Members of Gene Cluster

This cluster has a confidence assignment of non-High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_44433.3
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_44433.3CUST_6225_PI427708083AvailableAvailablecontig_274739 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os04g26834.1 -1 3e-119 367 170/206 (83%) 13104.m02538 protein eukaryotic aspartyl protease domain containing protein, expressed
TAIR PP10 AT1G05840.1 -1 7e-63 221 101/207 (49%) Eukaryotic aspartyl protease family protein | chr1:1762843-1766150 REVERSE LENGTH=485