- Predicted Gene MLOC_44357
MLOC_44357 FPKM values
FPKM by Treatment | FPKM by Replicate |
|
|
Treatment ID | Treatment Description | Rep 1 FPKM | Rep 2 FPKM | Rep 3 FPKM | Treatment FPKM |
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EMB | 4-day embryos dissected from germinating grains | 8.34119 | 10.3643 | 12.4447 | 9.32932 |
LEA | Shoots from the seedlings (10 cm shoot stage) | 15.8239 | 10.0483 | 13.8928 | 10.6438 |
INF1 | Young developing inflorescences (5mm) | 21.9527 | 23.7882 | 20.7225 | 16.8316 |
INF2 | Developing inflorescences (1-1.5 cm) | 19.1179 | 23.1912 | 18.4021 | 20.5829 |
ROO | Roots from the seedlings (10 cm shoot stage) | 7.15433 | 10.1098 | 9.36063 | 10.555 |
NOD | Developing tillers at six leaf stage, 3rd internode | 7.54831 | 11.6927 | 13.3244 | 36.599 |
CAR5 | Developing grain, bracts removed (5 DPA) | 13.3727 | 15.2107 | 11.703 | 11.9719 |
CAR15 | Developing grain, bracts removed (15 DPA) | 3.44285 | 3.74453 | 3.02347 | 6.96527 |
CDS Structure of MLOC_44357
Members of Gene Cluster
This cluster has a confidence assignment of
non-High Confidence.
The gene has a transcript that is part of a cluster represented by
MLOC_44357.2
Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)
Database | Hit | Frame | E-value | Score | % Identity | Description |
---|
Rice PP6 |
LOC_Os01g49940.2 |
-2 |
5e-151 |
458 |
232/263 (88%) |
13101.m15061 protein ESP4, putative, expressed |
TAIR PP10 |
AT1G27595.1 |
-2 |
3e-103 |
325 |
166/247 (67%) |
CONTAINS InterPro DOMAIN/s: Symplekin tight junction protein C-terminal (InterPro:IPR022075); BEST Arabidopsis thaliana protein match is: HEAT repeat-containing protein (TAIR:AT5G01400.1); Has 593 Blast hits to 297 proteins in 111 species: Archae - 0; Bacteria - 3; Metazoa - 139; Fungi - 49; Plants - 57; Viruses - 0; Other Eukaryotes - 345 (source: NCBI BLink). | chr1:9596475-9602917 FORWARD LENGTH=961 |