MLOC_44357 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains8.3411910.364312.44479.32932
LEAShoots from the seedlings (10 cm shoot stage)15.823910.048313.892810.6438
INF1Young developing inflorescences (5mm)21.952723.788220.722516.8316
INF2Developing inflorescences (1-1.5 cm)19.117923.191218.402120.5829
ROORoots from the seedlings (10 cm shoot stage)7.1543310.10989.3606310.555
NODDeveloping tillers at six leaf stage, 3rd internode7.5483111.692713.324436.599
CAR5Developing grain, bracts removed (5 DPA)13.372715.210711.70311.9719
CAR15Developing grain, bracts removed (15 DPA)3.442853.744533.023476.96527



CDS Structure of MLOC_44357






Members of Gene Cluster

This cluster has a confidence assignment of non-High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_44357.2
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_44357.2CUST_6213_PI427708083AvailableAvailablecontig_274596 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os01g49940.2 -2 5e-151 458 232/263 (88%) 13101.m15061 protein ESP4, putative, expressed
TAIR PP10 AT1G27595.1 -2 3e-103 325 166/247 (67%) CONTAINS InterPro DOMAIN/s: Symplekin tight junction protein C-terminal (InterPro:IPR022075); BEST Arabidopsis thaliana protein match is: HEAT repeat-containing protein (TAIR:AT5G01400.1); Has 593 Blast hits to 297 proteins in 111 species: Archae - 0; Bacteria - 3; Metazoa - 139; Fungi - 49; Plants - 57; Viruses - 0; Other Eukaryotes - 345 (source: NCBI BLink). | chr1:9596475-9602917 FORWARD LENGTH=961