MLOC_44354 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains3.7105410.68098.767138.26054
LEAShoots from the seedlings (10 cm shoot stage)14.769714.840412.202412.0357
INF1Young developing inflorescences (5mm)16.464815.011115.851312.7426
INF2Developing inflorescences (1-1.5 cm)19.502919.394716.013519.5806
ROORoots from the seedlings (10 cm shoot stage)3.389636.416414.356847.08736
NODDeveloping tillers at six leaf stage, 3rd internode5.08548.218029.1473628.6114
CAR5Developing grain, bracts removed (5 DPA)18.388216.290418.535716.2993
CAR15Developing grain, bracts removed (15 DPA)9.98268.856318.8102219.989



CDS Structure of MLOC_44354






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_44354.7
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
AK375019NoneNoneNoneNone
MLOC_44354.7CUST_2644_PI427708080AvailableAvailablecontig_274586 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os06g43120.1 +2 0.0 1170 843/1801 (47%) 13106.m04512 protein zinc finger C-x8-C-x5-C-x3-H type family protein, expressed
TAIR PP10 AT1G21580.1 +2 7e-117 414 284/715 (40%) Zinc finger C-x8-C-x5-C-x3-H type family protein | chr1:7557822-7565655 REVERSE LENGTH=2166