MLOC_44349 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains8.6409511.005210.479310.5796
LEAShoots from the seedlings (10 cm shoot stage)11.1126.464356.024736.84145
INF1Young developing inflorescences (5mm)16.877318.162118.093715.0155
INF2Developing inflorescences (1-1.5 cm)22.178422.515120.311424.684
ROORoots from the seedlings (10 cm shoot stage)8.3877411.8779.3596513.7863
NODDeveloping tillers at six leaf stage, 3rd internode8.9943412.425610.749140.6398
CAR5Developing grain, bracts removed (5 DPA)15.353414.250615.269514.9982
CAR15Developing grain, bracts removed (15 DPA)6.313435.863615.9710614.2817



CDS Structure of MLOC_44349






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_44349.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
AK375878NoneNoneNoneNone
MLOC_44349.1CUST_2642_PI427708080AvailableAvailablecontig_274579 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os02g22370.1 -1 0.0 1078 594/724 (82%) 13102.m02510 protein expressed protein
TAIR PP10 AT5G40740.1 -1 0.0 753 434/747 (58%) unknown protein; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). | chr5:16302229-16306371 REVERSE LENGTH=741