MLOC_4430 FPKM values
| FPKM by Treatment | FPKM by Replicate |
|---|
| 
|
| Treatment ID | Treatment Description | Rep 1 FPKM | Rep 2 FPKM | Rep 3 FPKM | Treatment FPKM |
|---|
| EMB | 4-day embryos dissected from germinating grains | 4.00723 | 3.40153 | 2.51178 | 3.31379 |
| LEA | Shoots from the seedlings (10 cm shoot stage) | 2.10163 | 2.27998 | 1.65035 | 1.65647 |
| INF1 | Young developing inflorescences (5mm) | 6.87708 | 6.24715 | 6.78824 | 5.52332 |
| INF2 | Developing inflorescences (1-1.5 cm) | 6.39176 | 6.35063 | 6.76082 | 7.05279 |
| ROO | Roots from the seedlings (10 cm shoot stage) | 2.12888 | 3.21745 | 3.23054 | 3.4827 |
| NOD | Developing tillers at six leaf stage, 3rd internode | 0.501458 | 0.631493 | 1.22657 | 2.28252 |
| CAR5 | Developing grain, bracts removed (5 DPA) | 3.70945 | 3.86374 | 4.2177 | 3.79542 |
| CAR15 | Developing grain, bracts removed (15 DPA) | 0.948903 | 0.808622 | 0.577106 | 1.89067 |
CDS Structure of MLOC_4430
Members of Gene Cluster
This cluster has a confidence assignment of
High Confidence.
The gene has a transcript that is part of a cluster represented by
MLOC_4430.1
Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)
| Database | Hit | Frame | E-value | Score | % Identity | Description |
|---|
| Rice PP6 |
LOC_Os09g01620.1 |
-2 |
0.0 |
678 |
354/441 (80%) |
13109.m00075 protein RNA pseudouridine synthase, putative, expressed |
| TAIR PP10 |
AT3G19440.1 |
-2 |
5e-123 |
375 |
209/399 (52%) |
Pseudouridine synthase family protein | chr3:6740778-6743132 FORWARD LENGTH=477 |
