MLOC_44275 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains0.4837070.6305670.5776990.541988
LEAShoots from the seedlings (10 cm shoot stage)6.5758813.126721.746710.9082
INF1Young developing inflorescences (5mm)1.078120.9663980.8709990.760422
INF2Developing inflorescences (1-1.5 cm)0.6039950.8420950.9431940.777235
ROORoots from the seedlings (10 cm shoot stage)0.3445450.6025330.5017320.624846
NODDeveloping tillers at six leaf stage, 3rd internode0.2508730.2778660.6224431.05182
CAR5Developing grain, bracts removed (5 DPA)0.04978010.04550460.165460.0741987
CAR15Developing grain, bracts removed (15 DPA)0.2229080.216770.1256960.428042



CDS Structure of MLOC_44275






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_44275.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_44275.1CUST_12202_PI427708080AvailableAvailablecontig_274444 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os09g26160.1 -1 0.0 1232 634/916 (69%) 13109.m02513 protein glutamate receptor, putative, expressed
TAIR PP10 AT2G29110.1 -1 0.0 644 365/859 (42%) | Symbols: ATGLR2.8, GLR2.8 | glutamate receptor 2.8 | chr2:12506880-12510552 REVERSE LENGTH=947