MLOC_44246 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains1.976121.184311.537841.3045
LEAShoots from the seedlings (10 cm shoot stage)2.35152.756462.986022.05564
INF1Young developing inflorescences (5mm)1.264251.2552.418911.14935
INF2Developing inflorescences (1-1.5 cm)2.914751.9112.627352.33785
ROORoots from the seedlings (10 cm shoot stage)1.512341.640363.914131.89193
NODDeveloping tillers at six leaf stage, 3rd internode2.013662.680653.909488.10499
CAR5Developing grain, bracts removed (5 DPA)1.782861.778222.116591.57051
CAR15Developing grain, bracts removed (15 DPA)1.422021.784481.129762.6752



CDS Structure of MLOC_44246






Members of Gene Cluster

This cluster has a confidence assignment of non-High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_44246.6
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_44246.6CUST_12453_PI427708083AvailableAvailablecontig_274388 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os01g09252.1 -3 1e-31 123 60/83 (72%) 13101.m00982 protein WD domain, G-beta repeat domain containing protein, expressed
TAIR PP10 AT5G51980.1 -1 1e-17 85 36/62 (58%) Transducin/WD40 repeat-like superfamily protein | chr5:21113650-21115902 REVERSE LENGTH=437