MLOC_44162 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains63.069894.9736100.25883.4057
LEAShoots from the seedlings (10 cm shoot stage)102.769126.958128.09599.885
INF1Young developing inflorescences (5mm)90.597991.3206108.91575.9672
INF2Developing inflorescences (1-1.5 cm)127.722112.929127.111125.862
ROORoots from the seedlings (10 cm shoot stage)86.9354116.306107.459132.921
NODDeveloping tillers at six leaf stage, 3rd internode115.537124.742141.405442.839
CAR5Developing grain, bracts removed (5 DPA)88.103685.160289.151879.5824
CAR15Developing grain, bracts removed (15 DPA)46.263144.831648.734598.4694



CDS Structure of MLOC_44162






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_44162.2
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_44162.2CUST_12181_PI427708080AvailableAvailablecontig_274287 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os10g42710.1 -3 0.0 779 411/583 (70%) 13110.m04017 protein RCD1, putative, expressed
TAIR PP10 AT1G32230.1 -3 2e-75 259 179/589 (30%) | Symbols: RCD1, CEO, CEO1, ATP8, AtRCD1 | WWE protein-protein interaction domain protein family | chr1:11613427-11615894 FORWARD LENGTH=589