MLOC_44161 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains15.951514.148214.29914.8236
LEAShoots from the seedlings (10 cm shoot stage)29.815517.675919.446618.9266
INF1Young developing inflorescences (5mm)12.279510.561613.30939.46269
INF2Developing inflorescences (1-1.5 cm)11.53439.9159211.791111.1984
ROORoots from the seedlings (10 cm shoot stage)4.159777.248587.322747.60582
NODDeveloping tillers at six leaf stage, 3rd internode12.362816.025613.800342.6741
CAR5Developing grain, bracts removed (5 DPA)14.262714.247913.761112.8254
CAR15Developing grain, bracts removed (15 DPA)2.814792.377142.425995.53849



CDS Structure of MLOC_44161






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_44161.3
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
AK250052.1NoneNoneNoneNone
MLOC_44161.3CUST_2624_PI427708080AvailableAvailablecontig_274287 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os10g42700.1 +1 0.0 578 285/311 (92%) 13110.m04016 protein CS domain containing protein, putative, expressed
TAIR PP10 AT2G35500.1 +1 2e-122 393 194/304 (64%) | Symbols: SKL2 | shikimate kinase like 2 | chr2:14914038-14915909 FORWARD LENGTH=387