MLOC_44158 FPKM values

FPKM by TreatmentFPKM by Replicate
There are no FPKM-by-treatment values calculated for this gene.


Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains2.683661.191871.381490
LEAShoots from the seedlings (10 cm shoot stage)0.7893510.8575191.763040
INF1Young developing inflorescences (5mm)0.1623380.2555720.1691460
INF2Developing inflorescences (1-1.5 cm)0.2650190.2371430.2259250
ROORoots from the seedlings (10 cm shoot stage)3.665512.091482.740110
NODDeveloping tillers at six leaf stage, 3rd internode2.267081.43551.397790
CAR5Developing grain, bracts removed (5 DPA)0.4537060.3956030.4840910
CAR15Developing grain, bracts removed (15 DPA)0.2070030.1166750.09738610



CDS Structure of MLOC_44158






Members of Gene Cluster

This cluster has a confidence assignment of non-High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_44158.2
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
AK357336NoneNoneNoneNone
MLOC_44158.2CUST_229_PI427708083AvailableNonecontig_274281 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os02g44610.1 +2 0.0 402 236/480 (49%) 13102.m04989 protein protein kinase, putative, expressed
TAIR PP10 AT5G61930.2 -2 2e-108 357 180/310 (58%) | Symbols: APO3 | Arabidopsis thaliana protein of unknown function (DUF794) | chr5:24866230-24867665 REVERSE LENGTH=402