MLOC_44147 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains11.666268.193553.177147.1147
LEAShoots from the seedlings (10 cm shoot stage)60.496749.926640.526943.5251
INF1Young developing inflorescences (5mm)174.041163.298140.39127.759
INF2Developing inflorescences (1-1.5 cm)192.642182.946144.537186.359
ROORoots from the seedlings (10 cm shoot stage)16.973948.801333.720451.627
NODDeveloping tillers at six leaf stage, 3rd internode13.435217.849717.204462.8556
CAR5Developing grain, bracts removed (5 DPA)98.380480.639393.525783.1023
CAR15Developing grain, bracts removed (15 DPA)33.182527.640727.409763.4618



CDS Structure of MLOC_44147






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_44147.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_44147.1CUST_12178_PI427708080AvailableAvailablecontig_274259 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os05g07050.1 +1 0.0 3393 1694/1733 (98%) 13105.m00763 protein pre-mRNA-processing-splicing factor 8, putative, expressed
TAIR PP10 AT1G80070.1 +1 0.0 3347 1665/1733 (96%) | Symbols: SUS2, EMB33, EMB177, EMB14 | Pre-mRNA-processing-splicing factor | chr1:30118052-30127574 FORWARD LENGTH=2359