MLOC_44123 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains26.720216.69116.855319.9825
LEAShoots from the seedlings (10 cm shoot stage)10.06056.7444110.51028.05324
INF1Young developing inflorescences (5mm)29.348330.780131.829824.8531
INF2Developing inflorescences (1-1.5 cm)23.476921.431720.066723.6813
ROORoots from the seedlings (10 cm shoot stage)11.513213.954812.562817.2738
NODDeveloping tillers at six leaf stage, 3rd internode0.8255262.10127.892339.72231
CAR5Developing grain, bracts removed (5 DPA)15.498715.855317.751415.8045
CAR15Developing grain, bracts removed (15 DPA)3.862273.912642.991898.31179



CDS Structure of MLOC_44123






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_44123.2
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_44123.2CUST_17681_PI427708080AvailableAvailablecontig_274218 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os11g16480.1 +1 2e-47 163 88/137 (64%) 13111.m01667 protein transposon protein, putative, unclassified, expressed
TAIR PP10 AT5G48240.1 +1 4e-23 97 59/112 (53%) unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: nucleolus; EXPRESSED IN: cultured cell; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1665 (InterPro:IPR012459); Has 402 Blast hits to 382 proteins in 162 species: Archae - 0; Bacteria - 4; Metazoa - 139; Fungi - 111; Plants - 54; Viruses - 1; Other Eukaryotes - 93 (source: NCBI BLink). | chr5:19559301-19561153 FORWARD LENGTH=309