MLOC_44109 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains0000
LEAShoots from the seedlings (10 cm shoot stage)0000
INF1Young developing inflorescences (5mm)0000
INF2Developing inflorescences (1-1.5 cm)0.3337380.4084450.139610.34711
ROORoots from the seedlings (10 cm shoot stage)0.7667231.00101.45282
NODDeveloping tillers at six leaf stage, 3rd internode0000
CAR5Developing grain, bracts removed (5 DPA)3.142863.841972.703752.85965
CAR15Developing grain, bracts removed (15 DPA)0.5959750.1276740.5240790.960415



CDS Structure of MLOC_44109






Members of Gene Cluster

This cluster has a confidence assignment of non-High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_44109.3
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_44109.3CUST_6181_PI427708083AvailableAvailablecontig_274193 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os02g46130.1 -1 3e-41 147 70/80 (88%) 13102.m05175 protein tRNA synthetases class II domain containing protein, expressed
TAIR PP10 AT4G31180.2 -1 1e-37 136 63/80 (79%) Class II aminoacyl-tRNA and biotin synthetases superfamily protein | chr4:15156696-15159362 FORWARD LENGTH=558