MLOC_44090 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains104.35293.588106.331111.255
LEAShoots from the seedlings (10 cm shoot stage)55.39262.625275.251760.7044
INF1Young developing inflorescences (5mm)7.653983.854144.083224.79764
INF2Developing inflorescences (1-1.5 cm)2.17182.66862.959993.15948
ROORoots from the seedlings (10 cm shoot stage)105.61485.925356.3324118.344
NODDeveloping tillers at six leaf stage, 3rd internode20.180616.095810.449753.8078
CAR5Developing grain, bracts removed (5 DPA)10.29159.644710.489911.2066
CAR15Developing grain, bracts removed (15 DPA)4.263173.537283.462589.56773



CDS Structure of MLOC_44090






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_44090.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
AK361091NoneNoneNoneNone
MLOC_44090.1CUST_18035_PI427708080AvailableAvailablecontig_274172 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os10g28200.1 +2 0.0 741 353/378 (93%) 13110.m02388 protein NAD dependent epimerase/dehydratase family protein, putative, expressed
TAIR PP10 AT5G28840.2 +2 0.0 698 336/379 (89%) | Symbols: GME | GDP-D-mannose 3,5-epimerase | chr5:10862472-10864024 REVERSE LENGTH=377