MLOC_4408 FPKM values
| FPKM by Treatment | FPKM by Replicate |
|---|
| 
|
| Treatment ID | Treatment Description | Rep 1 FPKM | Rep 2 FPKM | Rep 3 FPKM | Treatment FPKM |
|---|
| EMB | 4-day embryos dissected from germinating grains | 10.5833 | 10.6635 | 10.6374 | 10.8325 |
| LEA | Shoots from the seedlings (10 cm shoot stage) | 10.882 | 11.3313 | 12.0135 | 9.64416 |
| INF1 | Young developing inflorescences (5mm) | 13.1289 | 15.6566 | 14.5847 | 12.0198 |
| INF2 | Developing inflorescences (1-1.5 cm) | 14.0784 | 13.4122 | 12.7911 | 15.0046 |
| ROO | Roots from the seedlings (10 cm shoot stage) | 13.7571 | 13.0261 | 10.9108 | 15.7436 |
| NOD | Developing tillers at six leaf stage, 3rd internode | 7.05812 | 8.96787 | 8.26101 | 27.9205 |
| CAR5 | Developing grain, bracts removed (5 DPA) | 13.0233 | 14.421 | 14.3016 | 14.0046 |
| CAR15 | Developing grain, bracts removed (15 DPA) | 12.1405 | 12.3913 | 10.2303 | 27.3983 |
CDS Structure of MLOC_4408
Members of Gene Cluster
This cluster has a confidence assignment of
High Confidence.
The gene has a transcript that is part of a cluster represented by
MLOC_4408.1
Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)
| Database | Hit | Frame | E-value | Score | % Identity | Description |
|---|
| Rice PP6 |
LOC_Os09g33970.1 |
-1 |
0.0 |
907 |
504/621 (81%) |
13109.m03401 protein expressed protein |
| TAIR PP10 |
AT2G46900.1 |
-1 |
4e-152 |
465 |
256/515 (50%) |
CONTAINS InterPro DOMAIN/s: Basic helix-loop-helix, Nulp1-type (InterPro:IPR006994); Has 2929 Blast hits to 2464 proteins in 333 species: Archae - 2; Bacteria - 151; Metazoa - 913; Fungi - 372; Plants - 141; Viruses - 47; Other Eukaryotes - 1303 (source: NCBI BLink). | chr2:19269678-19271987 FORWARD LENGTH=627 |
