MLOC_44067 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains0.04947741.609821.283561.1635
LEAShoots from the seedlings (10 cm shoot stage)139.43353.5073109.77285.274
INF1Young developing inflorescences (5mm)0.1847940.08263940.2331010.155082
INF2Developing inflorescences (1-1.5 cm)0.2821510.3063830.3543710.358016
ROORoots from the seedlings (10 cm shoot stage)0.08860330.2116033.844280.700392
NODDeveloping tillers at six leaf stage, 3rd internode413.142273.611286.668841.462
CAR5Developing grain, bracts removed (5 DPA)8.439976.968347.237667.52262
CAR15Developing grain, bracts removed (15 DPA)0.2685870.2126990.1673920.545235



CDS Structure of MLOC_44067






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_44067.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
AK249144.1NoneNoneNoneNone
MLOC_44067.1CUST_2613_PI427708080AvailableAvailablecontig_274125 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os01g52240.1 +2 6e-171 483 236/268 (88%) 13101.m05463 protein chlorophyll A-B binding protein, putative, expressed
TAIR PP10 AT2G34420.1 +2 6e-163 461 229/267 (86%) | Symbols: LHB1B2, LHCB1.5 | photosystem II light harvesting complex gene B1B2 | chr2:14522716-14523513 REVERSE LENGTH=265