MLOC_43986 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains176.237116.682132.891134.246
LEAShoots from the seedlings (10 cm shoot stage)185.954167.764154.076135.053
INF1Young developing inflorescences (5mm)243.249286.284315.308235.969
INF2Developing inflorescences (1-1.5 cm)629.504346.187598.582548.042
ROORoots from the seedlings (10 cm shoot stage)500.472339.126499.713418.258
NODDeveloping tillers at six leaf stage, 3rd internode368.527378.226850.6681333.84
CAR5Developing grain, bracts removed (5 DPA)169.998172.798166.535163.589
CAR15Developing grain, bracts removed (15 DPA)324.837302.211319.69757.556



CDS Structure of MLOC_43986






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_43986.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
AK372340NoneNoneNoneNone
MLOC_43986.1CUST_2610_PI427708080AvailableAvailablecontig_273714 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os06g41010.4 +3 3e-94 287 140/172 (81%) 13106.m04278 protein zinc finger A20 and AN1 domain-containing stress-associated protein, putative, expressed
TAIR PP10 AT1G51200.4 +3 4e-63 206 102/176 (58%) A20/AN1-like zinc finger family protein | chr1:18985690-18986211 FORWARD LENGTH=173