MLOC_43949 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains13.470625.547822.701222.058
LEAShoots from the seedlings (10 cm shoot stage)36.0514107.51752.555854.9926
INF1Young developing inflorescences (5mm)16.289119.109814.573814.216
INF2Developing inflorescences (1-1.5 cm)7.17528.22636.600878.0296
ROORoots from the seedlings (10 cm shoot stage)2.263775.518174.700516.11464
NODDeveloping tillers at six leaf stage, 3rd internode12.34569.593556.9086232.1506
CAR5Developing grain, bracts removed (5 DPA)40.140772.501784.357662.1506
CAR15Developing grain, bracts removed (15 DPA)17.692821.984519.211843.984



CDS Structure of MLOC_43949






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_43949.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
AK250326.1NoneNoneNoneNone
MLOC_43949.1CUST_2607_PI427708080AvailableAvailablecontig_273528 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os03g47610.8 +3 0.0 1201 595/643 (93%) 13103.m05130 protein thiamine biosynthesis protein thiC, putative, expressed
TAIR PP10 AT2G29630.3 +3 0.0 1055 514/619 (83%) | Symbols: THIC | thiaminC | chr2:12667395-12669569 FORWARD LENGTH=644