MLOC_43828 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains102.58277.185486.571186.7822
LEAShoots from the seedlings (10 cm shoot stage)72.520855.900166.792656.5578
INF1Young developing inflorescences (5mm)64.57579.583.231863.1673
INF2Developing inflorescences (1-1.5 cm)90.42985.966188.638997.4395
ROORoots from the seedlings (10 cm shoot stage)102.02488.318788.8805114.53
NODDeveloping tillers at six leaf stage, 3rd internode111.471101.77116.288348.196
CAR5Developing grain, bracts removed (5 DPA)64.32463.505560.528162.7955
CAR15Developing grain, bracts removed (15 DPA)19.366418.324819.487845.6888



CDS Structure of MLOC_43828






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_43828.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
AK250285.1NoneNoneNoneNone
MLOC_43828.1CUST_2602_PI427708080AvailableAvailablecontig_272892 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os07g13530.1 +1 9e-111 326 189/201 (94%) 13107.m01406 protein ras-related protein, putative, expressed
TAIR PP10 AT3G46060.3 +1 2e-104 309 178/202 (88%) | Symbols: ARA3 | RAB GTPase homolog 8A | chr3:16917908-16919740 FORWARD LENGTH=216