MLOC_43777 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains13.493220.464620.586518.613
LEAShoots from the seedlings (10 cm shoot stage)7.886013.786696.07275.25916
INF1Young developing inflorescences (5mm)49.785446.836249.792241.2236
INF2Developing inflorescences (1-1.5 cm)36.640629.253331.37834.9911
ROORoots from the seedlings (10 cm shoot stage)9.3770314.803715.954417.0402
NODDeveloping tillers at six leaf stage, 3rd internode1.309911.430373.903136.05586
CAR5Developing grain, bracts removed (5 DPA)12.97313.262913.286112.6415
CAR15Developing grain, bracts removed (15 DPA)9.950018.3829.918822.0735



CDS Structure of MLOC_43777






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_43777.4
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
AK248666.1NoneNoneNoneNone
MLOC_43777.4CUST_2599_PI427708080AvailableAvailablecontig_272649 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os01g43020.1 +3 0.0 957 528/631 (84%) 13101.m04434 protein CTP synthase, putative, expressed
TAIR PP10 AT3G12670.1 +3 0.0 825 460/619 (74%) | Symbols: emb2742 | CTP synthase family protein | chr3:4020351-4024086 REVERSE LENGTH=591