MLOC_43743 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains12.221710.37629.7284911.1845
LEAShoots from the seedlings (10 cm shoot stage)6.28117.047897.001555.8799
INF1Young developing inflorescences (5mm)28.78930.009626.418225.0279
INF2Developing inflorescences (1-1.5 cm)24.613819.894619.583924.9818
ROORoots from the seedlings (10 cm shoot stage)7.9425212.937212.728715.3924
NODDeveloping tillers at six leaf stage, 3rd internode0.6190440.7948432.849344.05503
CAR5Developing grain, bracts removed (5 DPA)12.484913.212212.731813.5253
CAR15Developing grain, bracts removed (15 DPA)2.409732.331462.310385.82175



CDS Structure of MLOC_43743






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_43743.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
AK252075.1NoneNoneNoneNone
MLOC_43743.1CUST_2597_PI427708080AvailableAvailablecontig_272435 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os04g43922.1 -2 0.0 521 274/315 (87%) 13104.m04372 protein exosome complex exonuclease rrp4, putative, expressed
TAIR PP10 AT1G03360.1 -2 2e-136 399 207/314 (66%) | Symbols: ATRRP4, RRP4 | ribosomal RNA processing 4 | chr1:824653-826179 FORWARD LENGTH=322