MLOC_43721 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains72.6369109.21595.024886.3872
LEAShoots from the seedlings (10 cm shoot stage)63.41998.783623.0704823.2423
INF1Young developing inflorescences (5mm)453.996445.522446.297327.476
INF2Developing inflorescences (1-1.5 cm)357.037557.748382.517454.055
ROORoots from the seedlings (10 cm shoot stage)14.607652.891152.017250.2062
NODDeveloping tillers at six leaf stage, 3rd internode01.227150.0941325.13881
CAR5Developing grain, bracts removed (5 DPA)115.487102.838102.50391.6818
CAR15Developing grain, bracts removed (15 DPA)9.284756.214610.272117.1449



CDS Structure of MLOC_43721






Members of Gene Cluster

This cluster has a confidence assignment of non-High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_43721.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_43721.1CUST_6125_PI427708083AvailableAvailablecontig_27232 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os02g47150.1 +2 1e-25 102 48/77 (62%) 13102.m05304 protein DNA topoisomerase 2, putative, expressed
TAIR PP10 AT3G23890.2 +2 2e-22 92 41/71 (58%) | Symbols: TOPII, ATTOPII | topoisomerase II | chr3:8624931-8631106 FORWARD LENGTH=1438