MLOC_43557 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains2.337486.154635.12254.71018
LEAShoots from the seedlings (10 cm shoot stage)9.565139.212516.941727.26751
INF1Young developing inflorescences (5mm)3.487815.360145.927883.91905
INF2Developing inflorescences (1-1.5 cm)9.46996.544436.238317.96427
ROORoots from the seedlings (10 cm shoot stage)4.088853.536199.806394.90602
NODDeveloping tillers at six leaf stage, 3rd internode6.151499.805649.8412231.0006
CAR5Developing grain, bracts removed (5 DPA)8.183117.413386.144966.59841
CAR15Developing grain, bracts removed (15 DPA)71.339854.076369.6818142.245



CDS Structure of MLOC_43557






Members of Gene Cluster

This cluster has a confidence assignment of non-High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_43557.3
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_43557.3CUST_6104_PI427708083AvailableAvailablecontig_271283 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os03g03660.1 +1 1e-45 105 47/58 (81%) 13103.m00359 protein CAMK_CAMK_like.17 - CAMK includes calcium/calmodulin depedent protein kinases, expressed
TAIR PP10 AT4G35310.1 +1 2e-40 97 43/58 (74%) | Symbols: CPK5, ATCPK5 | calmodulin-domain protein kinase 5 | chr4:16802436-16804628 FORWARD LENGTH=556