MLOC_43556 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains18.967519.001318.918319.8813
LEAShoots from the seedlings (10 cm shoot stage)24.431632.690430.650524.9953
INF1Young developing inflorescences (5mm)10.940312.629814.990811.6198
INF2Developing inflorescences (1-1.5 cm)14.525914.045615.147216.77
ROORoots from the seedlings (10 cm shoot stage)34.819132.625135.553540.7409
NODDeveloping tillers at six leaf stage, 3rd internode46.283262.300292.8475213.142
CAR5Developing grain, bracts removed (5 DPA)16.905819.084818.266319.0927
CAR15Developing grain, bracts removed (15 DPA)23.102620.188216.927652.8362



CDS Structure of MLOC_43556






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_43556.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
AK353844NoneNoneNoneNone
MLOC_43556.1CUST_2587_PI427708080AvailableAvailablecontig_271272 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os01g71980.1 -2 1e-156 445 214/255 (84%) 13101.m07841 protein rho-GTPase-activating protein-like, putative, expressed
TAIR PP10 AT3G10210.1 -2 1e-103 309 144/232 (62%) SEC14 cytosolic factor family protein / phosphoglyceride transfer family protein | chr3:3160416-3161579 REVERSE LENGTH=237